PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0053900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 193aa    MW: 21205.5 Da    PI: 9.1315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0053900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-114389554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +   E+ RRd++N++f +L  +l +    + +K +Ka+iL  Av+ +++L
  Spipo14G0053900 43 KACKEKMRRDKLNDRFLQLGAILEPG---KPPKIDKAAILSDAVRMVNQL 89
                     5678*********************9...99***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.9093889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-84389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1344116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-84495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1345111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-84794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSLVLAVSSC GGTATSHSGA EMFAPQDTFY RMRSEATSLP NSKACKEKMR RDKLNDRFLQ  60
LGAILEPGKP PKIDKAAILS DAVRMVNQLR SEAQKLKEAN EGLQETIQEL KAEKNELQDE  120
KQRLKVEKES LEQQVRAMSV PSSYVPHPPM MPAGPFPVPR PAGSGGKLMM LVIGFSGFPM  180
WQYMPPVNID TS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931430.13e-75PREDICTED: transcription factor ILR3-like
SwissprotQ9FH378e-65ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0N7KNL93e-75A0A0N7KNL9_ORYSJ; Os07g0543000 protein
TrEMBLK3ZW956e-75K3ZW95_SETIT; Uncharacterized protein
TrEMBLK3ZW986e-75K3ZW98_SETIT; Uncharacterized protein
STRINGBGIOSGA024146-PA2e-74(Oryza sativa Indica Group)
STRINGLOC_Os07g35870.12e-74(Oryza sativa Japonica Group)
STRINGSi030877m2e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-60bHLH family protein